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# NAME

PyMOLConvertLigandFileFormat.py.py - Convert between ligand file formats

# SYNOPSIS

PyMOLConvertLigandFileFormat.py.py [--overwrite] [-w <dir>] -i <infile> -o <outfile>

PyMOLConvertLigandFileFormat.py.py -h | --help | -e | --examples

# DESCRIPTION

Convert between ligand file formats.

The supported input and output file formats are: MDLMOL (.mol), MOL2 (.mol2), and PDB (.pdb).

# OPTIONS

-e, --examples

  Print examples.

-h, --help

  Print this help message.

-i, --infile <infile>

  Input file name.

-o, --outfile <outfile>

  Output file name.

--overwrite

  Overwrite existing files.

-w, --workingdir <dir>

  Location of working directory which defaults to the current directory.

# EXAMPLES

To convert MDLMOL file format to MOL2 file format, type:

% PyMOLConvertLigandFileFormat.py -i caffeine.mol -o caffeine.mol2

To convert MDLMOL file format to PDB file format, type:

% PyMOLConvertLigandFileFormat.py -i caffeine.mol -o caffeine.pdb

# AUTHOR

Manish Sud

# SEE ALSO

PyMOLConvertPMLToPSE.py, PyMOLSplitChainsAndLigands.py, PyMOLVisualizeMacromolecules.py

# COPYRIGHT

Copyright (C) 2018 Manish Sud. All rights reserved.

The functionality available in this script is implemented using PyMOL, a molecular visualization system on an open source foundation originally developed by Warren DeLano.

This file is part of MayaChemTools.

MayaChemTools is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.

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